Tanriver M, Müller M, Levasseur MD, Richards D, Majima S, DeMello A, Yamauchi Y, Bode JW. Peptide-Directed Attachment of Hydroxylamines to Specific Lysines of IgG Antibodies for Bioconjugations with Acylboronates. Angew Chem Int Ed Engl. 2024 Apr 22;63(17):e202401080. doi: 10.1002/anie.202401080. Epub 2024 Mar 15. PMID: 38421342.
 

Bigotti MG, Klein K, Gan ES, Anastasina M, Andersson S, Vapalahti O, Katajisto P, Erdmann M, Davidson AD, Butcher SJ, Collinson I, Ooi EE, Balistreri G, Brancaccio A, Yamauchi Y. The α-dystroglycan N-terminus is a broad-spectrum antiviral agent against SARS-CoV-2 and enveloped viruses. Antiviral Res. 2024 Apr;224:105837. doi: 10.1016/j.antiviral.2024.105837. Epub 2024 Feb 20. PMID: 38387750.
 

Artcibasova A, Wang L, Anchisi S, Yamauchi Y, Schmolke M, Matthias P, Stelling J. A quantitative model for virus uncoating predicts influenza A infectivity. Cell Rep. 2023 Dec 26;42(12):113558. doi: 10.1016/j.celrep.2023.113558. Epub 2023 Dec 14. PMID: 38103200.
 

Prasad V, Cerikan B, Stahl Y, Kopp K, Magg V, Acosta-Rivero N, Kim H, Klein K, Funaya C, Haselmann U, Cortese M, Heigwer F, Bageritz J, Bitto D, Jargalsaikhan S, Neufeldt C, Pahmeier F, Boutros M, Yamauchi Y, Ruggieri A, Bartenschlager R. Enhanced SARS-CoV-2 entry via UPR-dependent AMPK-related kinase NUAK2. Mol Cell. 2023 Jul 20;83(14):2559-2577.e8. doi: 10.1016/j.molcel.2023.06.020. Epub 2023 Jul 7. PMID: 37421942.
 

​

Yamauchi Y. Editorial: Virus Microscopy. Microscopy (Oxf). 2023 Jun 8;72(3):163. doi: 10.1093/jmicro/dfad029. PMID: 37217186; PMCID: PMC10308204.
 

​

Olszewski D, Georgi F, Murer L, Andriasyan V, Kuttler F, Petkidis A, Witte R, Yakimovich A, Fischer L, Rozanova A, Yamauchi Y, Turcatti G, Greber UF. High- content, arrayed compound screens with rhinovirus, influenza A virus and herpes simplex virus infections. Sci Data. 2022 Oct 8;9(1):610. doi: 10.1038/s41597-022-01733-4. PMID: 36209289; PMCID: PMC9547564.
 

Simonetti B, Daly JL, Simón-Gracia L, Klein K, Weeratunga S, Antón-Plágaro C, Tobi A, Hodgson L, Lewis PA, Heesom KJ, Shoemark DK, Davidson AD, Collins BM, Teesalu T, Yamauchi Y, Cullen PJ. ESCPE-1 mediates retrograde endosomal sorting of the SARS-CoV-2 host factor Neuropilin-1. Proc Natl Acad Sci U S A. 2022 Jun 21;119(25):e2201980119. doi: 10.1073/pnas.2201980119. Epub 2022 Jun 13. PMID: 35696571; PMCID: PMC9231623.
 

Fujioka Y, Kashiwagi S, Yoshida A, Satoh AO, Fujioka M, Amano M, Yamauchi Y, Ohba Y. A method for the generation of pseudovirus particles bearing SARS coronavirus spike protein in high yields. Cell Struct Funct. 2022 Jun 25;47(1):43-53. doi: 10.1247/csf.21047. Epub 2022 Apr 28. PMID: 35491102; PMCID: PMC10511058.
 

Wang L, Moreira EA, Kempf G, Miyake Y, Oliveira Esteves BI, Fahmi A, Schaefer JV, Dreier B, Yamauchi Y, Alves MP, Plückthun A, Matthias P. Disrupting the HDAC6-ubiquitin interaction impairs infection by influenza and Zika virus and cellular stress pathways. Cell Rep. 2022 Apr 26;39(4):110736. doi: 10.1016/j.celrep.2022.110736. PMID: 35476995; PMCID: PMC9065369.
 

Balistreri G, Yamauchi Y, Teesalu T. A widespread viral entry mechanism: The C-end Rule motif-neuropilin receptor interaction. Proc Natl Acad Sci U S A. 2021 Nov 16;118(49):e2112457118. doi: 10.1073/pnas.2112457118. PMID: 34772761; PMCID: PMC8670474.
 

Moreira EA, Yamauchi Y, Matthias P. How Influenza Virus Uses Host Cell Pathways during Uncoating. Cells. 2021 Jul 8;10(7):1722. doi: 10.3390/cells10071722. PMID: 34359892; PMCID: PMC8305448.
 

Szkalisity A, Piccinini F, Beleon A, Balassa T, Varga IG, Migh E, Molnar C, Paavolainen L, Timonen S, Banerjee I, Ikonen E, Yamauchi Y, Ando I, Peltonen J, Pietiäinen V, Honti V, Horvath P. Regression plane concept for analysing continuous cellular processes with machine learning. Nat Commun. 2021 May 5;12(1):2532. doi: 10.1038/s41467-021-22866-x. PMID: 33953203; PMCID: PMC8100172.
 

Etibor TA, Yamauchi Y, Amorim MJ. Liquid Biomolecular Condensates and Viral Lifecycles: Review and Perspectives. Viruses. 2021 Feb 25;13(3):366. doi: 10.3390/v13030366. PMID: 33669141; PMCID: PMC7996568.
 

Wang Y, Sharma P, Jefferson M, Zhang W, Bone B, Kipar A, Bitto D, Coombes JL, Pearson T, Man A, Zhekova A, Bao Y, Tripp RA, Carding SR, Yamauchi Y, Mayer U, Powell PP, Stewart JP, Wileman T. Non-canonical autophagy functions of ATG16L1 in epithelial cells limit lethal infection by influenza A virus. EMBO J. 2021 Mar 15;40(6):e105543. doi: 10.15252/embj.2020105543. Epub 2021 Feb 15. PMID: 33586810; PMCID: PMC7957399.
 

Daly JL, Simonetti B, Klein K, Chen KE, Williamson MK, Antón-Plágaro C, Shoemark DK, Simón-Gracia L, Bauer M, Hollandi R, Greber UF, Horvath P, Sessions RB, Helenius A, Hiscox JA, Teesalu T, Matthews DA, Davidson AD, Collins BM, Cullen PJ, Yamauchi Y. Neuropilin-1 is a host factor for SARS-CoV-2 infection. Science. 2020 Nov 13;370(6518):861-865. doi: 10.1126/science.abd3072. Epub 2020 Oct 20. PMID: 33082294; PMCID: PMC7612957. 
    Comment by Kielian M. Enhancing host cell infection by SARS-CoV-2. Science. 2020 Nov 13;370(6518):765-766. doi: 10.1126/science.abf0732. PMID: 33184193.

​

Yamauchi Y. Influenza A virus uncoating. Adv Virus Res. 2020;106:1-38. doi: 10.1016/bs.aivir.2020.01.001. Epub 2020 Feb 13. PMID: 32327145.
 

Simpson C, Yamauchi Y. Microtubules in Influenza Virus Entry and Egress. Viruses. 2020 Jan 17;12(1):117. doi: 10.3390/v12010117. PMID: 31963544; PMCID: PMC7020094.
 

Fernandez J, Machado AK, Lyonnais S, Chamontin C, Gärtner K, Léger T, Henriquet C, Garcia C, Portilho DM, Pugnière M, Chaloin L, Muriaux D, Yamauchi Y, Blaise M, Nisole S, Arhel NJ. Transportin-1 binds to the HIV-1 capsid via a nuclear localization signal and triggers uncoating. Nat Microbiol. 2019 Nov;4(11):1840-1850. doi: 10.1038/s41564-019-0575-6. Epub 2019 Oct 14. PMID: 31611641.
 

Yamauchi Y. Quantum dots crack the influenza uncoating puzzle. Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2404-2406. doi: 10.1073/pnas.1822089116. Epub 2019 Jan 31. PMID: 30705104; PMCID: PMC6377496.
 

Miyake Y, Keusch JJ, Decamps L, Ho-Xuan H, Iketani S, Gut H, Kutay U, Helenius A, Yamauchi Y. Influenza virus uses transportin 1 for vRNP debundling during cell entry. Nat Microbiol. 2019 Apr;4(4):578-586. doi: 10.1038/s41564-018-0332-2. Epub 2019 Jan 28. PMID: 30692667.
 

Miyake Y, Matthias P, Yamauchi Y. Purification of Unanchored Polyubiquitin Chains from Influenza Virions. Methods Mol Biol. 2018;1836:329-342. doi: 10.1007/978-1-4939-8678-1_16. PMID: 30151581.
 

Hodgson L, Verkade P, Yamauchi Y. Correlative Light and Electron Microscopy of Influenza Virus Entry and Budding. Methods Mol Biol. 2018;1836:237-260. doi: 10.1007/978-1-4939-8678-1_12. PMID: 30151577.
 

Hutchinson EC, Yamauchi Y. Understanding Influenza. Methods Mol Biol. 2018;1836:1-21. doi: 10.1007/978-1-4939-8678-1_1. PMID: 30151566.
 

Sobotzki N, Schafroth MA, Rudnicka A, Koetemann A, Marty F, Goetze S, Yamauchi Y, Carreira EM, Wollscheid B. HATRIC-based identification of receptors for orphan ligands. Nat Commun. 2018 Apr 17;9(1):1519. doi: 10.1038/s41467-018-03936-z. PMID: 29666374; PMCID: PMC5904110.
 

Rudnicka A, Yamauchi Y. Ubiquitin in Influenza Virus Entry and Innate Immunity. Viruses. 2016 Oct 24;8(10):293. doi: 10.3390/v8100293. PMID: 27783058; PMCID: PMC5086625.
 

Rowse M, Qiu S, Tsao J, Yamauchi Y, Wang G, Luo M. Reduction of Influenza Virus Envelope's Fusogenicity by Viral Fusion Inhibitors. ACS Infect Dis. 2016 Jan 8;2(1):47-53. doi: 10.1021/acsinfecdis.5b00109. Epub 2015 Oct 22. PMID: 27622947.
 

Gschweitl M, Ulbricht A, Barnes CA, Enchev RI, Stoffel-Studer I, Meyer- Schaller N, Huotari J, Yamauchi Y, Greber UF, Helenius A, Peter M. A SPOPL/Cullin-3 ubiquitin ligase complex regulates endocytic trafficking by targeting EPS15 at endosomes. Elife. 2016 Mar 23;5:e13841. doi: 10.7554/eLife.13841. PMID: 27008177; PMCID: PMC4846373.
 

Yamauchi Y, Greber UF. Principles of Virus Uncoating: Cues and the Snooker Ball. Traffic. 2016 Jun;17(6):569-92. doi: 10.1111/tra.12387. Epub 2016 Mar 31. PMID: 26875443; PMCID: PMC7169695.
 

Rowse M, Qiu S, Tsao J, Xian T, Khawaja S, Yamauchi Y, Yang Z, Wang G, Luo M. Characterization of potent fusion inhibitors of influenza virus. PLoS One. 2015 Mar 24;10(3):e0122536. doi: 10.1371/journal.pone.0122536. PMID: 25803288; PMCID: PMC4372562.
 

Banerjee I, Miyake Y, Nobs SP, Schneider C, Horvath P, Kopf M, Matthias P, Helenius A, Yamauchi Y.

Influenza A virus uses the aggresome processing machinery for host cell entry. Science. 2014 Oct 24;346(6208):473-7. doi: 10.1126/science.1257037. PMID: 25342804.
       Comment by Rajsbaum R, García-Sastre A. Virology. Unanchored ubiquitin in virus uncoating. Science. 2014 Oct 24;346(6208):427-8. doi: 10.1126/science.1261509. PMID: 25342790.

​

Banerjee I, Yamauchi Y, Helenius A, Horvath P. High-content analysis of sequential events during the early phase of influenza A virus infection. PLoS One. 2013 Jul 12;8(7):e68450. doi: 10.1371/journal.pone.0068450. PMID: 23874633; PMCID: PMC3709902.
 

Yamauchi Y, Helenius A. Virus entry at a glance. J Cell Sci. 2013 Mar 15;126(Pt 6):1289-95. doi: 10.1242/jcs.119685. Epub 2013 May 2. PMID: 23641066.

 

Yamauchi Y, Boukari H, Banerjee I, Sbalzarini IF, Horvath P, Helenius A. Histone deacetylase 8 is required for centrosome cohesion and influenza A virus entry. PLoS Pathog. 2011 Oct;7(10):e1002316. doi: 10.1371/journal.ppat.1002316. Epub 2011 Oct 27. PMID: 22046129; PMCID: PMC3203190.
 

Li Z, Yamauchi Y, Kamakura M, Murayama T, Goshima F, Kimura H, Nishiyama Y. Herpes simplex virus requires poly(ADP-ribose) polymerase activity for efficient replication and induces extracellular signal-related kinase-dependent phosphorylation and ICP0-dependent nuclear localization of tankyrase 1. J Virol. 2012 Jan;86(1):492-503. doi: 10.1128/JVI.05897-11. Epub 2011 Oct 19. PMID: 22013039; PMCID: PMC3255871.
 

Ohta A, Yamauchi Y, Muto Y, Kimura H, Nishiyama Y. Herpes simplex virus type 1 UL14 tegument protein regulates intracellular compartmentalization of major tegument protein VP16. Virol J. 2011 Jul 26;8:365. doi: 10.1186/1743-422X-8-365. PMID: 21791071; PMCID: PMC3157456.
 

Kimura H, Miyake K, Yamauchi Y, Nishiyama K, Iwata S, Iwatsuki K, Gotoh K, Kojima S, Ito Y, Nishiyama Y. Identification of Epstein-Barr virus (EBV)-infected lymphocyte subtypes by flow cytometric in situ hybridization in EBV-associated lymphoproliferative diseases. J Infect Dis. 2009 Oct 1;200(7):1078-87. doi: 10.1086/605610. PMID: 19698076.
 

Wada K, Mizoguchi S, Ito Y, Kawada J, Yamauchi Y, Morishima T, Nishiyama Y, Kimura H. Multiplex real-time PCR for the simultaneous detection of herpes simplex virus, human herpesvirus 6, and human herpesvirus 7. Microbiol Immunol. 2009 Jan;53(1):22-9. doi: 10.1111/j.1348-0421.2008.00090.x. PMID: 19161554.
 

Yamauchi Y, Kiriyama K, Kimura H, Nishiyama Y. Herpes simplex virus induces extensive modification and dynamic relocalisation of the nuclear mitotic apparatus (NuMA) protein in interphase cells. J Cell Sci. 2008 Jun 15;121(Pt 12):2087-96. doi: 10.1242/jcs.031450. Epub 2008 May 27. PMID: 18505791.
 

Yamauchi Y, Kiriyama K, Kubota N, Kimura H, Usukura J, Nishiyama Y. The UL14 tegument protein of herpes simplex virus type 1 is required for efficient nuclear transport of the alpha transinducing factor VP16 and viral capsids. J Virol. 2008 Feb;82(3):1094-106. doi: 10.1128/JVI.01226-07. Epub 2007 Nov 21. PMID: 18032514; PMCID: PMC2224439.
 

Ushijima Y, Luo C, Goshima F, Yamauchi Y, Kimura H, Nishiyama Y. Determination and analysis of the DNA sequence of highly attenuated herpes simplex virus type 1 mutant HF10, a potential oncolytic virus. Microbes Infect. 2007 Feb;9(2):142-9. doi: 10.1016/j.micinf.2006.10.019. Epub 2006 Dec 12. PMID: 17218138.
 

Yamauchi Y. [Molecular chaperones and herpes simplex viruses]. Nihon Rinsho. 2006 Mar;64 Suppl 3:163-6. Japanese. PMID: 16615460.
 

Matsuzaki A, Yamauchi Y, Kato A, Goshima F, Kawaguchi Y, Yoshikawa T, Nishiyama Y. US3 protein kinase of herpes simplex virus type 2 is required for the stability of the UL46-encoded tegument protein and its association with virus particles. J Gen Virol. 2005 Jul;86(Pt 7):1979-1985. doi: 10.1099/vir.0.80949-0. PMID: 15958677.
 

Nozawa N, Yamauchi Y, Ohtsuka K, Kawaguchi Y, Nishiyama Y. Formation of aggresome-like structures in herpes simplex virus type 2-infected cells and a potential role in virus assembly. Exp Cell Res. 2004 Oct 1;299(2):486-97. doi: 10.1016/j.yexcr.2004.06.010. PMID: 15350546.
 

Yamauchi Y, Daikoku T, Goshima F, Nishiyama Y. Herpes simplex virus UL14 protein blocks apoptosis. Microbiol Immunol. 2003;47(9):685-9. doi: 10.1111/j.1348-0421.2003.tb03432.x. PMID: 14584616.
 

Nozawa N, Daikoku T, Koshizuka T, Yamauchi Y, Yoshikawa T, Nishiyama Y. Subcellular localization of herpes simplex virus type 1 UL51 protein and role of palmitoylation in Golgi apparatus targeting. J Virol. 2003 Mar;77(5):3204-16. doi: 10.1128/jvi.77.5.3204-3216.2003. PMID: 12584344; PMCID: PMC149782.
 

Yamauchi Y, Goshima F, Yoshikawa T, Nozawa N, Koshizuka T, Nishiyama Y. Intercellular trafficking of herpes simplex virus type 2 UL14 deletion mutant proteins. Biochem Biophys Res Commun. 2002 Nov 1;298(3):357-63. doi: 10.1016/s0006-291x(02)02452-x. PMID: 12413948.
 

Nozawa N, Daikoku T, Yamauchi Y, Takakuwa H, Goshima F, Yoshikawa T, Nishiyama Y. Identification and characterization of the UL7 gene product of herpes simplex virus type 2. Virus Genes. 2002 Jun;24(3):257-66. doi: 10.1023/a:1015332716927. PMID: 12086147.
 

Murata T, Goshima F, Yamauchi Y, Koshizuka T, Takakuwa H, Nishiyama Y. Herpes simplex virus type 2 US3 blocks apoptosis induced by sorbitol treatment. Microbes Infect. 2002 Jun;4(7):707-12. doi: 10.1016/s1286-4579(02)01590-3. PMID: 12067830.
 

Yamauchi Y, Wada K, Goshima F, Daikoku T, Ohtsuka K, Nishiyama Y. Herpes simplex virus type 2 UL14 gene product has heat shock protein (HSP)-like functions. J Cell Sci. 2002 Jun 15;115(Pt 12):2517-27. doi: 10.1242/jcs.115.12.2517. PMID: 12045222.
 

Yamauchi Y, Wada K, Goshima F, Takakuwa H, Daikoku T, Yamada M, Nishiyama Y. The UL14 protein of herpes simplex virus type 2 translocates the minor capsid protein VP26 and the DNA cleavage and packaging UL33 protein into the nucleus of coexpressing cells. J Gen Virol. 2001 Feb;82(Pt 2):321-330. doi: 10.1099/0022-1317-82-2-321. PMID: 11161269.